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Showing posts with label publishing. Show all posts
Showing posts with label publishing. Show all posts

Tuesday, April 1, 2014

Lamarckian sh*t? Why epigenetics is not eugenics

An argument could be made that communicating scientific advances to the public has never been more important. As the NIH budget stagnated, and then was cut by Sequestration, many of us have realized what a poor job we have been doing convincing the public of the importance of basic science research. Neuroscience itself has been under more scrutiny recently. As Adam Gopnik of The New Yorker wrote in a review of three new books bashing brain research, “Neuroscience can often answer the obvious questions but rarely the interesting ones.” If that is the way that the public sees it, then clearly we are losing something in translation. Recently there has been a push to reverse this trend and reaffirm biomedical research as a source of inspiration and hope for the public. The actor and author Alan Alda, who has long held a passion for science, has made it a personal mission to improve communication about science because “How are scientists going to get money from policy makers, if our leaders and legislators can’t understand what they do?”1









Late last year, Brian Dias, a postdoctoral fellow in Kerry Ressler’s laboratory at Emory, found out just how difficult communicating his work to the public can be. Dias and Ressler had been working on testing whether olfactory fear conditioning would transmit a sensitivity to the conditioned odor across generations. That is, using a mouse model they were exploring whether an experience in your lifetime could affect your children or grandchildren’s response to their environment. They studied the olfactory system because it is extraordinarily well-mapped (thanks in large part to work that Dr. Ressler did in Nobel Laureate Linda Buck’s lab as a graduate student) and shows gross structural changes in mice when they learn to associate an odor with an unpleasant experience1. Recently, there has been a great deal of interest in understanding how an organism’s environment can affect the way in which genes are expressed via a phenomenon call epigenetics.



Epigenetics refers to chemical modifications to the genome that do not affect the DNA sequence itself. Normally, the DNA molecule of each chromosome is tightly packed in a highly complex yet orderly fashion so that it can fit inside the nucleus of the cell. Several types of chemical modifications can be made to DNA that affect how tightly it packs and in turn, the ability of enzymes to transcribe the sequence and initiate the production of the proteins that it codes for. Epigenetic marks do not affect the letters in the code, just how often it is read. Genes can effectively be silenced or activated by these mechanisms, which are still not completely understood.



Researchers have found that the early life environment can have long term effects on individuals and even their offspring2 – so called inter-generational epigenetics3. Lately, interest has even shifted to assessing trans-generational epigenetic effects. In 2010, an Australian group reported that in rodents, paternal high-fat diet can lead to dysfunction in pancreatic insulin-producing β-cells in female offspring4. More recently, a study of pre-diabetic mice found that epigenetic marks in the pancreas and, importantly, in sperm persisted for multiple generations as did a pre-disposition to impaired glucose metabolism5. Trans-generational epigenetic inheritance has been reported to affect lifespan in the nematode C. elegans6, and now some studies suggest that the effects of stress or abuse can be passed to the next generation in mice7 and humans8.



In this special Neuroethics Journal Club focused on “Neuroscience in the News”, the group was fortunate to get to hear the story of publishing this exciting paper9 first hand from Dr. Dias. One of the most interesting aspects of the discussion was the timing of the initial presentation of the results and publication of the paper. Dias gave a presentation at Neuroscience 2013 on November 12th that created a great deal of buzz, so much so that Virginia Hughes of National Geographic’s “Only Human” blog reported on the presentation and also on the Twitter activity itself. Reponses ranged from “Astonishing if true” to “Crazy Lamarkian [sic] shit”.



The Nature Neuroscience editors themselves may have been thinking something along the same lines as the latter commenter as they made a portrait of Jean-Baptiste Lamarck – the champion of the contentious evolutionary theory that acquired adaptations during life shape subsequent generations – the cover image for the issue with Dias and Ressler’s article. The trouble with associating Lamarck and trans-generational epigenetics is that it could lead to the same type of reasoning that gave rise to eugenics in the early to mid-20th century. Disadvantaged individuals who have lived with hunger and been exposed to violence or other trauma could be seen as permanently damaged and may be dissuaded from having children to avoid perpetuating some sort of “bad epigenetics”. The fact is, genes simply code for proteins and the jump from the molecular level to behavior is complex to say the least. Dias and Ressler were careful to describe the behavioral phenomenon in the offspring of the fear-conditioned mice as an increased sensitivity, not specifically a fear of the odor. At this point, they were not able to determine a molecular mechanism or specific cause of the behavioral change.



The paper appeared online December 1st, almost three weeks after Dias’ SfN talk and the ensuing controversy and armchair critiquing. However, during most of that time the authors were essentially handcuffed by the journal’s press embargo policy until the paper was published online on December 1st. Granted, it is rare that a presentation at a conference would generate this much excitement before the paper was published, but it seems that even with early online publication of articles, peer-reviewed journals have trouble keeping up with 21st century, 140-character communication. The rapid, yet accurate dissemination of results will likely be an issue that journals continue to struggle with, while occasionally leaving authors in limbo.



In addition to the discussion surrounding publication of a controversial paper, the journal club also delved into some of the ethical issues that may arise from studies such as this one. For example, should the children of veterans who have suffered from PTSD be treated as an “at-risk” group, and what would that entail? Or, should members of the military be screened for a family history of trauma based on the idea that those individuals whose parents experienced traumatic events may be more vulnerable to adverse outcomes during or after their tour of duty? It seemed that there was agreement that when a plausible mechanism for how a fear memory – and particularly one associated with a certain smell – could impact the epigenetic marks in sperm cells in order to be passed on to subsequent generations, and then tested, the field would be better able to understand intervention opportunities. Trauma and stress are major public health issues just based on what we know about how they can shape an individual’s behavioral and physiological responses to later challenges in life10,11. If in fact trauma and adversity can also shape our children’s sensory experience of the world through heritable, epigenetic changes, then it will be even more important to understand how the effects can be mitigated.



Additionally, accurate and clear communication of results to the public remains as important as ever. While the avenues for communication have changed drastically in recent years, and in many ways have made communicating easier, publishers and authors will likely continue to grapple with the new speed and power of social media. What role, if any, should these platforms play in the communication of science? If one of the goals is to engage the public’s interest then it seems that social media presents a great opportunity to do that but there are obvious concerns. While it may not be possible to fit detailed methods and results into 140 characters, new initiatives such as PubMed Commons may help reduce the formality and finality associated with published papers and increase discussion among scientists. Still, it will be interesting to see how social media is adopted by scientists and whether it helps at all in bridging our current communication gap with the public.





References



1. Jones, S. V., Choi, D. C., Davis, M. & Ressler, K. J. Learning-dependent structural plasticity in the adult olfactory pathway. The Journal of neuroscience : the official journal of the Society for Neuroscience 28, 13106-13111, doi:10.1523/JNEUROSCI.4465-08.2008 (2008).

2. Jirtle, R. L. & Skinner, M. K. Environmental epigenomics and disease susceptibility. Nature reviews. Genetics 8, 253-262, doi:10.1038/nrg2045 (2007).

3. Heard, E., Martienssen, R.A. Transgenerational Epigenetic Inheritance: Myths and Mechanisms. Cell 157, 95-109 (2014).

4. Ng, S. F. et al. Chronic high-fat diet in fathers programs beta-cell dysfunction in female rat offspring. Nature 467, 963-966, doi:10.1038/nature09491 (2010).

5. Wei, Y. et al. Paternally induced transgenerational inheritance of susceptibility to diabetes in mammals. Proceedings of the National Academy of Sciences of the United States of America 111, 1873-1878, doi:10.1073/pnas.1321195111 (2014).

6. Greer, E. L. et al. Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans. Nature 479, 365-371, doi:10.1038/nature10572 (2011).

7. Dietz, D. M. et al. Paternal transmission of stress-induced pathologies. Biological psychiatry 70, 408-414, doi:10.1016/j.biopsych.2011.05.005 (2011).

8. Jovanovic, T. et al. Physiological markers of anxiety are increased in children of abused mothers. Journal of child psychology and psychiatry, and allied disciplines 52, 844-852, doi:10.1111/j.1469-7610.2011.02410.x (2011).

9. Dias, B. G. & Ressler, K. J. Parental olfactory experience influences behavior and neural structure in subsequent generations. Nature neuroscience 17, 89-96, doi:10.1038/nn.3594 (2014).

10. Gluckman, P. D., Hanson, M. A., Cooper, C. & Thornburg, K. L. Effect of in utero and early-life conditions on adult health and disease. The New England journal of medicine 359, 61-73, doi:10.1056/NEJMra0708473 (2008).

11. Murgatroyd, C. et al. Dynamic DNA methylation programs persistent adverse effects of early-life stress. Nature neuroscience 12, 1559-1566, doi:10.1038/nn.2436 (2009).





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Purcell, R. (2014). Lamarckian sh*t? Why epigenetics is not eugenics. The Neuroethics Blog. Retrieved on , from http://www.theneuroethicsblog.com/2014/03/lamarckian-sht-why-epigenetics-is-not.html

Tuesday, July 23, 2013

About the Physiological Society of Japan Ethics Symposium

By Tamami Fukushi, Ph.D



Tamami Fukushi is a Senior Research Scientist at the Platform for the Realization of Regenerative Medicine at the Foundation for Biomedical Research and Innovation in Kobe, Japan and a member of the AJOB Neuroscience editorial board. Her research focuses on areas in neuroethics, neurophysiology, and the regulation and ethics of stem cell research.



At every annual meeting since 2003, the Physiological Society of Japan has scheduled a research ethics symposium, usually dealing with animal experiments and research misconduct. One purpose of the symposia has been to raise audience awareness regarding current ethical issues in neuroscience research. In addition, the symposia have sought to open their audience’s eyes to taking action regarding ethical practices in their daily research activities.



This year, the society took up ethical issues in neuroscience. The symposium was organized by Dr. Kiyoshi Kurata, the society’s Chief of Research Ethics Committee, and Dr. Atsushi Iriki, the Editor-in-Chief of Neuroscience Research, which is published as the official journal of the Japan Neuroscience Society.



The development of neuroscience research in the past several decades has brought two characteristic trends to the research community. From the experimental perspective, progress in research protocols has extended research targets in various biological scales, from molecule(s) to intact animal or human subject(s); technical innovations in imaging, recording, and stimulating tools have enabled us to observe the neural function of these subjects more precisely. However, it also puts subject(s) at risk of invasive procedures with neurosurgery and encroaches on the autonomy of human subjects. In addition, the advancement of computer software has brought us various methodologies for data illustration which may encourage the modification of unfavorable original data for unethical reasons. Several articles have reported that between 2-14% of academic journal papers may have ethical problems, which should be seriously considered in efforts to preserve just practices among peer-reviewed publications [1].



On the other hand, from the social perspective, neuroscience has been getting more popular and familiar to the general public through mass media and entertainment  devices such as TV programs, the internet, the Nintendo Brain Age game, and free online software for brain training. A popularization of neuroscience has led researchers to explain their research results with “broader” and “easier” words, as well as to consider the ethics of neuroscience research in the public sphere and in their scientific practices. The symposium organizers and speakers considered both of these trends in preparing their presentations.



The Ethical Components of Neuroscience Research



At the symposium presentation, I first outlined a history of neuroethics in Japan and Asia, and summarized the ethical components of neuroscience research using a matrix with two different X-axes. In figure1, the lower X-axis indicated the biological hierarchy of experimental targets and the upper one represented social layers in the research community [2]. The lower components in the figure were mainly related to safety and efficacy issues, which might be regulated by quantitative criteria based on the (pre-clinical) experimental data and case studies of subjects/patients. On the other hand, the upper components referred to more complicated issues in social, legal, and public contexts, and more qualitative approaches and open discussions would be needed to provide a suitable solution. The matrix was useful for categorizing current issues in neuroethics and their relationships with other presentations, in which each speaker explained further details of selected topics.



Dr. Kurata discussed the significance of information disclosure in relation to the renewal of Japanese laws pertaining to animal experiments in 2012, and recent changes in guidelines regarding conflicts of interest in the Physiological Society of Japan [3]. He also suggested a possible role for non-profit organizations (NPO), where researchers could help address legal and political issues surrounding animal experimentation.



Dr. Iriki reported on ethical problems in scientific publishing, which he has experienced as the editor-in-chief of the peer-reviewed journal Neuroscience Research. These problems have included multiple submissions, gift authorship (or the practice of awarding authorship to an individual who has not significantly contributed to the study), data fabrication, falsification, and plagiarism [4]. While certain kinds of misconduct can technically be prevented, it is important to engage with the personal morality of individual researchers to ensure transparency in peer-review process.



The last speaker, Dr. Tashiro, introduced recent developments in ethical principles geared toward clinical research. He focused on the concepts of “collaborative research partnerships” and “respect for human research participation,” and drew upon the eight ethical principles issued by the Bioethics department at National Institutes of Health Clinical Center [5, 6]. He also emphasized the importance of support from the ethics consultation system as well as the IRB system and the needs of professionals for effective consultation.







Figure 1. Ethical Components of Neuroscience Research




There were 30 audience-members who had various backgrounds in different fields of physiology, with various  roles and responsibility at their institutions/academic research communities. Through the open discussions, we recognized that appropriate actions based on the morality of individual researchers would be key to keeping competition fair in peer-reviewed science, in both the basic and clinical settings. It was also suggested that institutional/organizational monitoring systems at higher levels of the research community are needed to strengthen the community's accountability to the public. While we had less opportunity to discuss ethics of neuroscience from the perspective of the general public (or in the media), which might be the “third X-axis” on our matrix, the meeting was a successful in encouraging the researchers to refine their moral principles in both their individual and societal dimensions.



In recent years, the Japanese neuroscience community has achieved great progress in laboratory ethics by revising experimental guidelines and developing safety criteria for human brain research (see http://www.jnss.org/en/guideline/rinri/ (in English) and http://jscn.umin.ac.jp/news/index.html#121116-2 (in Japanese)). The next neuroethical issue to be faced by the Japanese research community, and which should be more extensively considered, is “how to visualize, explain, and share the experimental result(s) more ethically to others.” This kind of ethical problem must be considered by integrating media ethics, research misconduct, and public relations.



References



[1] Fanelli, Daniele. “How many scientists fabricate and falsify research? A systematic review and meta-analysis of survey data.” PLoS ONE 4, (2009) e5738.

[2] Fukushi, T. "A decade of neuroethics: Impact on neuroscience in Japan and Asia." The journal of physiological Sciences 63 supplement 1, (2013):S88.

[3] Kurata, K. "Importance of information disclosure in animal experiment ethics and conflict of interest." The journal of physiological Sciences 63 supplement 1, (2013):S88.

[4] Iriki, A. "Responsible conduct of research and ethics of scientific publishing." The journal of physiological Sciences 63 supplement 1, (2013):S88.

[5] Tashiro, S. "New trends in clinical research ethics: Eight ethical principles and research ethics consultation" The journal of physiological Sciences 63 supplement 1, (2013):S89.

[6] Emanuel, Ezekiel J. et al. (2008). “An ethical framework for biomedical research,” Emanuel, Ezekiel J. et al. eds., The Oxford Textbook of Clinical Research Ethics, Oxford University Press, 123-135.



Want to cite this post?



Fukushi, T. (2013). About the Physiological Society of Japan Ethics Symposium. The Neuroethics Blog. Retrieved on
, from http://www.theneuroethicsblog.com/2013/07/about-physiological-society-of-japan_23.html

 





Monday, December 12, 2011

Graduate Student Neuroethics Publishing Opportunity!

**Special Graduate Student Issue**
Call for Papers
For the
American Journal of Bioethics Neuroscience
Seeking short (~3000 words) submissions from graduate students in all disciplines on topics in Neuroethics including:
Addiction - agency - animal experimentation - attention - awareness - brain damage - culture - free will -computers - consciousness - decision making - deep brain stimulation - brain manipulation - distributed cognition - dualism - ecology - emotion - enhancement - evolution - explanation - extended mind - feelings- brain imaging - genetics - identity - intentionality - introspection - knowledge - language -l earning - memory - metaphysics - military applications - mind-body interaction - moral belief - moral intuition - moral judgment - moral knowledge - moral responsibility - moral theory construction - neural networks - neuroanatomy - neurobiology - neurophilosophy - perception - personhood - pharmacology - philosophy - reason - psychiatric disorders - psychosurgery - psychotherapy - representation - responsibility - self, theory - truth - unconscious mechanisms
Please submit your manuscripts to
By January 31st, 2012
for the summer 2012 issue of AJOB Neuroscience
All submissions will be peer reviewed